PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878306.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 473aa    MW: 51502.3 Da    PI: 5.0124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31248305359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++tY+geH+h+
  XP_015878306.1 248 DLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFIVTYTGEHTHP 305
                     99************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-31232307IPR003657WRKY domain
SuperFamilySSF1182902.75E-27239307IPR003657WRKY domain
PROSITE profilePS5081133.43241307IPR003657WRKY domain
SMARTSM007743.9E-39246306IPR003657WRKY domain
PfamPF031069.8E-27248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEDWDLYAV VRSCKSATHT ATATAAAAAD DDNIYPISSS TSATCATEGE EEDPLACLAS  60
LKFEENDDPF SFPNLLVEPR NNAFQELQQF YEPFFSNHTT TTTTTTTSTN NLGVVIPDSS  120
ISEFGGKTSG QQQKQQHHHH DNNNLLNISA NIRPRFSPAS YISGFGGFSG DKQVKHAQAQ  180
PKQEQQNIEQ EARDQQGLII QRPETSSAAA TRCLSIGQSQ TQTPRSRKRK SQQKRMVCHV  240
TQENLSGDLW AWRKYGQKPI KGSPYPRNYY RCSSSKGCAA RKQVERSNTD PNMFIVTYTG  300
EHTHPRPTHR NSLAGSTRTK FTANQKQTTD KDTDQPSSTM AANNPSCSSP LSGTSLSPPT  360
PLTVQTDEET AKLQAEDKLS KESEEIMDDE NEDIEIEDDI LIPNMVMSED IFLGLQELGC  420
ISSSPPGTAT AADQIQSPSN SRDSFSEKGP SSLGSYWASS SSAAAGATVG GGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-222473081780Disease resistance protein RRS1
5w3x_D2e-222473081780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878306.10.0probable WRKY transcription factor 27
TrEMBLA0A2P5CB071e-120A0A2P5CB07_PARAD; WRKY domain containing protein
STRINGcassava4.1_008781m1e-104(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-53WRKY DNA-binding protein 27