PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878523.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family E2F/DP
Protein Properties Length: 346aa    MW: 38184.6 Da    PI: 5.9494
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2792174271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_015878523.1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 174
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.8E-1363345IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.5E-4687179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3491174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2593174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.01E-2194175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.24E-44179282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.54E-43180295No hitNo description
SMARTSM011385.8E-76181343IPR014889Transcription factor DP, C-terminal
PfamPF087813.1E-42182296IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGTRTQQPSR ADDDDDVPGG RGTTVSGQSV SMSGSVGSPS SRSEQTMATP VSDNTFLRLN  60
HLDIHGDDAG SQGAVASKKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPG NSVTSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL  180
NDIEELKNER LGLRNRIEKK AAYLQELEEQ FVGLQNLIQR NEQLYSSGNA PSGGVALPFI  240
LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCERPQS DDMTQNFVAD  300
GGEGSSMSGM YQSQIPLPSM ANTPVRAPTS PPLPGILKAR VKHEHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3985179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878523.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-169DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2I4ECM40.0A0A2I4ECM4_JUGRE; transcription factor-like protein DPB isoform X1
STRINGXP_004137174.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-158Transcription factor DP