PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015878564.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 793aa MW: 90663.6 Da PI: 7.8099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015878564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.8e-26	60	146	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+v+++ +eHnHel p XP_015878564.1 60 SFYKDYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPNGKWYVYSFIKEHNHELLP 146 5**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-24	60	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.2E-29	259	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.744	539	575	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-9	545	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-8	550	577	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MEHMKNFRPI ISSVGGEVHG GCAVDLNFPT TGMDSNVIMG NPILEPHDDM EFESHEAAYS 60 FYKDYAKSVG FGTAKLSSRR SRASREFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS 120 MHVKRKPNGK WYVYSFIKEH NHELLPAQAH FFRSHRNSDP LKNDVRIRRR KNLAAVSKLF 180 GAYQNVDCLE GYLRNQHDKG RSLVLEAGDA QFLLAHLMQM QEENPKFFYA VDLNEEHRLR 240 NVFWIDAKGM EDYCNFGDVI SFDTSYFSNK FKIPLVLFIG VNHHVQPTLL GCALIADETV 300 YTFVWLMQTW FIAMGEQAPR VILTDQNNAI KAAIAAVFPG TRHCFCLWHI MEKIPRQLEF 360 LSMWHDNFME KFNKCIFKSW SEEQFEKRWW KLVDRFNLRQ VEWIQSLYAD RIHWVPTFMR 420 DISFAGLSTT SRSESLNSSF DKYVQGETSL KEFMEQYRVI LEDRYEEEAK ANFDAWHETP 480 ELKSPSPFEK QMSLVYTHEV FRKFQDEVLG AAACHLKKEN ENETTTTYAV KDFEDNQNYI 540 VEWSESKSDI YCSCRSFEYK GYLCRHAIVV LQMSGIFSIP SKYVLQRWTN AARSRHSIGE 600 RLDVVQCKVR RFNDLCRRAI ILGEEGSLSQ ESYNIALCAI KEALKQCASL NNSVESNARP 660 NNGAIRGAHN IDEENQCSNA PNYKVSDAKV TTANKAPRRA GGAGKESSSN ENTNASKKGK 720 QVPQPEALTI GTQDGFHQML QNVVPGSGLG PMSMPVPTAA QLHGMAPTMF QNVASGHFHN 780 VASSHLQENR LPR

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MEHMKNFRPI ISSVGGEVHG GCAVDLNFPT TGMDSNVIMG NPILEPHDDM EFESHEAAYS  60
FYKDYAKSVG FGTAKLSSRR SRASREFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS  120
MHVKRKPNGK WYVYSFIKEH NHELLPAQAH FFRSHRNSDP LKNDVRIRRR KNLAAVSKLF  180
GAYQNVDCLE GYLRNQHDKG RSLVLEAGDA QFLLAHLMQM QEENPKFFYA VDLNEEHRLR  240
NVFWIDAKGM EDYCNFGDVI SFDTSYFSNK FKIPLVLFIG VNHHVQPTLL GCALIADETV  300
YTFVWLMQTW FIAMGEQAPR VILTDQNNAI KAAIAAVFPG TRHCFCLWHI MEKIPRQLEF  360
LSMWHDNFME KFNKCIFKSW SEEQFEKRWW KLVDRFNLRQ VEWIQSLYAD RIHWVPTFMR  420
DISFAGLSTT SRSESLNSSF DKYVQGETSL KEFMEQYRVI LEDRYEEEAK ANFDAWHETP  480
ELKSPSPFEK QMSLVYTHEV FRKFQDEVLG AAACHLKKEN ENETTTTYAV KDFEDNQNYI  540
VEWSESKSDI YCSCRSFEYK GYLCRHAIVV LQMSGIFSIP SKYVLQRWTN AARSRHSIGE  600
RLDVVQCKVR RFNDLCRRAI ILGEEGSLSQ ESYNIALCAI KEALKQCASL NNSVESNARP  660
NNGAIRGAHN IDEENQCSNA PNYKVSDAKV TTANKAPRRA GGAGKESSSN ENTNASKKGK  720
QVPQPEALTI GTQDGFHQML QNVVPGSGLG PMSMPVPTAA QLHGMAPTMF QNVASGHFHN  780
VASSHLQENR LPR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015878564.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878564.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A251QQB1	0.0	A0A251QQB1_PRUPE; Uncharacterized protein
STRING	XP_008234547.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]