PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878654.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 313aa    MW: 36072 Da    PI: 8.6437
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-1829120199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ +ps    ++ l +pkkf e++g++   s+  t+  ++gr W++ l  +k+ g++++ +GW+eFv+ + +++g f+vF++dg s+f  +v 
  XP_015878654.1  29 FFKIILPSTLDDQK-LEIPKKFGERFGNE--LSTIATIIVPNGRIWQLGL--QKSEGSFFFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVC 116
                     78888888877776.***********855..8999***************..********************************998888..9*9 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_015878654.1 117 IFNK 120
                     9987 PP
2B363.53.2e-202193021396
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++ l +p +f+ +++++  +s  +tle  +g++W v ++    ++s++  ltkGW++F+++n+Lk+gD++vF+l++r+++ l+v++
  XP_015878654.1 219 NKHLHVPTEFVMKYMQS--CSEVITLEAFNGKQWHVSCNSkdLRSSNKRSLTKGWRRFARDNNLKAGDVCVFELIKRKDTLLKVSI 302
                     344889********866..9999***************777877888889**************************9999788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2424128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-2324121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.91628121IPR003340B3 DNA binding domain
CDDcd100171.10E-1828119No hitNo description
PfamPF023621.7E-1429120IPR003340B3 DNA binding domain
SMARTSM010191.9E-1729121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-24205303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21207303IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.536207306IPR003340B3 DNA binding domain
CDDcd100173.24E-20209303No hitNo description
SMARTSM010192.1E-12210306IPR003340B3 DNA binding domain
PfamPF023625.1E-18219303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAVKQKGPWR NSGPSRSRMQ GLDSPSVHFF KIILPSTLDD QKLEIPKKFG ERFGNELSTI  60
ATIIVPNGRI WQLGLQKSEG SFFFVDGWQE FVEYHSIDSG YFLVFRYDGF SKFHVCIFNK  120
TATEIDYPWS APSSDVEPHF DKESSEDHDV DDEDDDADDD EISKTKQPVS SNEFIDKLMF  180
ASRHISRLKL SMQSKRALHA ARSCKCTRPS FIVLLHKYNK HLHVPTEFVM KYMQSCSEVI  240
TLEAFNGKQW HVSCNSKDLR SSNKRSLTKG WRRFARDNNL KAGDVCVFEL IKRKDTLLKV  300
SIYYADPAKK CSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1419330331140B3 domain-containing transcription factor VRN1
4i1k_B3e-1419330331140B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878654.10.0B3 domain-containing protein At4g01580-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-28B3 family protein