PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878685.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 223aa    MW: 26151.3 Da    PI: 8.9555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-213589256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++ +ft+eq++ Le+ Fe+n+++  +++++LA++lgL+ rqV +WFqNrRa++k
  XP_015878685.1 35 NNKKRFTDEQIRLLESIFESNSKLEPKKKAQLARELGLQPRQVAIWFQNRRARWK 89
                    56788*************************************************9 PP
2HD-ZIP_I/II124.84e-4036127293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+r+++eq++lLE+ Fe+++kLep++K++lareLglqprqva+WFqnrRAR+k+kq+Ek++++Lk++yd+l++  ++L++e+++L+ ++++
  XP_015878685.1  36 NKKRFTDEQIRLLESIFESNSKLEPKKKAQLARELGLQPRQVAIWFQNRRARWKSKQIEKEFRKLKAEYDSLASTFDSLKDENRSLHIQVQK 127
                     79*************************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.9E-211892IPR009057Homeodomain-like
PROSITE profilePS5007119.0463191IPR001356Homeobox domain
SMARTSM003891.2E-203395IPR001356Homeobox domain
PfamPF000461.3E-183589IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-213796IPR009057Homeodomain-like
CDDcd000863.31E-173992No hitNo description
PRINTSPR000311.7E-66271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.7E-67187IPR000047Helix-turn-helix motif
PfamPF021831.3E-1591132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEETEYSVSE NFDQFVTCLE SLPTTKNKKN KSKKNNKKRF TDEQIRLLES IFESNSKLEP  60
KKKAQLAREL GLQPRQVAIW FQNRRARWKS KQIEKEFRKL KAEYDSLAST FDSLKDENRS  120
LHIQVQKLND LLGKPQDLNS RDSKGLTENC KNMNWKGDEK CCLQERLGLD QSRGNIDSCN  180
ITRNVNAGDT REQGYELMNS NNQHVDVSLM SMENWYGFDP SRW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878685.11e-164homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A314XMA37e-64A0A314XMA3_PRUYE; Homeobox-leucine zipper protein ATHB-12
STRINGXP_008234673.14e-63(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-41homeobox 12