PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015878771.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 446aa MW: 49122 Da PI: 7.2133

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015878771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63	1.1e-19	29	83	4	58
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 +++ + ++h+kv+gR RRvR++++c +F L++eLG+ +d++ti+WLl q p XP_015878771.1 29 RRRFNGDRHSKVDGRHRRVRIPMTCCPGIFRLTRELGHRSDGQTIQWLLSQVRPD 83 677789*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.975	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-16	35	82	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.60.110.10	9.0E-65	128	427	IPR003010	Carbon-nitrogen hydrolase
SuperFamily	SSF56317	2.75E-64	128	427	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	1.78E-117	129	419	No hit	No description
PROSITE profile	PS50263	39.302	129	423	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	3.3E-55	130	407	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	161	176	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MDINQPNTGP PTGDVSLSQI QPSQQQQQRR RFNGDRHSKV DGRHRRVRIP MTCCPGIFRL 60 TRELGHRSDG QTIQWLLSQV RPDLVLPPRP YSLKNCLKSA NPVPLPQPLG LEDGTLEDKA 120 VALLPRPVVR ASVVQASTVL YDTPATLDKA ERLIAGAAAY GSQLVVFPEA FVGGYPHSVM 180 FDAMTENHSE INEEFQKYYA SAIDVPGPEV DRLANIAGKY KVHLVIGIVE RVGSYLFSTV 240 LYFDSLGRYL GKSRKLRQMA SECTVWCCGD KSALPVYDTT IGKIGGLLCW DNRMPHLRTE 300 LYAKGIEIYC APTSEAREVW RSSMTHIALE GGCFVLSANQ FCRRKDYPLP QEISSGDSNR 360 DTSLDRILCA GGSVIVSPSG TILAGPNYQG ESLISADLDL GEIARAKLEF NGVGHNAEPN 420 LSDRIIKRHN AALFAPAVKE EVCDEL

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MDINQPNTGP PTGDVSLSQI QPSQQQQQRR RFNGDRHSKV DGRHRRVRIP MTCCPGIFRL  60
TRELGHRSDG QTIQWLLSQV RPDLVLPPRP YSLKNCLKSA NPVPLPQPLG LEDGTLEDKA  120
VALLPRPVVR ASVVQASTVL YDTPATLDKA ERLIAGAAAY GSQLVVFPEA FVGGYPHSVM  180
FDAMTENHSE INEEFQKYYA SAIDVPGPEV DRLANIAGKY KVHLVIGIVE RVGSYLFSTV  240
LYFDSLGRYL GKSRKLRQMA SECTVWCCGD KSALPVYDTT IGKIGGLLCW DNRMPHLRTE  300
LYAKGIEIYC APTSEAREVW RSSMTHIALE GGCFVLSANQ FCRRKDYPLP QEISSGDSNR  360
DTSLDRILCA GGSVIVSPSG TILAGPNYQG ESLISADLDL GEIARAKLEF NGVGHNAEPN  420
LSDRIIKRHN AALFAPAVKE EVCDEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	7e-42	129	421	16	303	Nitrilase
3wuy_B	7e-42	129	421	16	303	Nitrilase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015878771.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878771.1	0.0	bifunctional nitrilase/nitrile hydratase NIT4B-like
Swissprot	Q42966	1e-145	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A2P5EBL5	0.0	A0A2P5EBL5_TREOI; Transcription factor
STRING	XP_008243489.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4583	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-19	TCP family protein

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]