PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015878863.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 118aa MW: 13801.7 Da PI: 9.7297

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015878863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45	2e-14	9	102	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt+ dv + l++p k+++ h ++++ l++ d sg+++e++l+ r +++ ++++ GW +Fv +++L+ gD + F + +++++ XP_015878863.1 9 FVKELTKTDVEDK--LSVPSKYVSYHRLNHH--ARLQVADfDSGNVYEFQLSLREAGNKptFMFQ-GWHRFVVEKQLRIGDKIYFDKM--EDGTF 96 8999999999876..9******99999955..4799999999*****99777777746666.******************44..66666 PP EEEEE- CS B3 93 vvkvfr 98 ++kv+ XP_015878863.1 97 RIKVLP 102 888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.2E-16	3	102	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-15	6	102	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.433	7	104	IPR003340	B3 DNA binding domain
CDD	cd10017	1.54E-11	8	102	No hit	No description
Pfam	PF02362	2.6E-11	9	101	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-10	9	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MEKTNKDRFV KELTKTDVED KLSVPSKYVS YHRLNHHARL QVADFDSGNV YEFQLSLREA 60 GNKPTFMFQG WHRFVVEKQL RIGDKIYFDK MEDGTFRIKV LPNSFSRIVP NAETGISS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015878863.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78