PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879020.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 392aa    MW: 43560.6 Da    PI: 5.8317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.73.5e-30541951128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                     lp+G++F+P+d +l+ e+L++k+ + +      ++++   ++  +iy  +P++Lp  +k++ ++++fF++  ++yatg+rk+r+        +++
  XP_015879020.1  54 LPAGVKFDPSDAQLL-EHLAAKCGAGNlsphmfIDEFIPtLEGEGIYCDHPENLP-GAKKDGSSVHFFHRIINAYATGQRKRRKihnqhsvtAEH 146
                     799************.99****99999776644333233366668**********.55677899*******************878888886669 PP

             NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++W+mh+y+l
  XP_015879020.1 147 VRWHKTGKTKAVVE-SGIQKGCKKIMVLYksSKKGSKPDKANWIMHQYHL 195
                     99***********9.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3438214IPR003441NAC domain
PROSITE profilePS5100530.12954214IPR003441NAC domain
PfamPF023658.5E-1355195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSTWLINSKA IAKKVKNASR SSAYQINDYG ANRECPKCHC HIDNSDVSSE WPGLPAGVKF  60
DPSDAQLLEH LAAKCGAGNL SPHMFIDEFI PTLEGEGIYC DHPENLPGAK KDGSSVHFFH  120
RIINAYATGQ RKRRKIHNQH SVTAEHVRWH KTGKTKAVVE SGIQKGCKKI MVLYKSSKKG  180
SKPDKANWIM HQYHLGAEED EKEGEYVVSK IFYQQQKQTD KDDKSPLIED SEIVALHTSP  240
RTPNTNPPIP PRHGKSIFCD DVIDDNKLQA SAKEAGPTQG TSHAPQPDIA KDDMGYPEWL  300
AGESQAVENS DINCLDETLL CKEIFDSGLN YMSDADFASG TNDLPKNGNA SYGIADLENL  360
ELDTPPDFQL SDLQFSSQES ILGWLDNFEK KF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879020.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLA0A2P5BFR00.0A0A2P5BFR0_TREOI; NAC domain containing protein
STRINGXP_008230522.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-87NAC domain containing protein 44