PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879215.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family E2F/DP
Protein Properties Length: 316aa    MW: 35822.5 Da    PI: 9.5086
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP28.62.3e-092264771
         E2F_TDP 47 YDilNVLealnliekkekneirwkg 71
                    YD++N+Le+++++++k+kn+++wkg
  XP_015879215.1  2 YDVVNILESIGVVARKAKNQYTWKG 26
                    ***********************98 PP
2E2F_TDP66.82.8e-2186166171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +++ksL ll+q+f+kl+ +s+ +++ l+++ak+L  +       ++k+RR+YD++NV+++lnliek     + k+++rw g
  XP_015879215.1  86 KSDKSLALLSQNFIKLFLCSNVDMILLDNAAKALPGDaddetTLRTKVRRLYDVANVFSSLNLIEKirhseSGKPAYRWLG 166
                     579*******************************777*99999999***********************9999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023198.2E-7126IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-8128IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-2083167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-2686166IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-1688166IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-1188167IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYDVVNILES IGVVARKAKN QYTWKGLEEI PRCLEQLKKD GLKENFNSAG SCSSARVSNE  60
NQCGGLLSLN TGGEANHLAS LRKNNKSDKS LALLSQNFIK LFLCSNVDMI LLDNAAKALP  120
GDADDETTLR TKVRRLYDVA NVFSSLNLIE KIRHSESGKP AYRWLGWKGK LKNGFDTASE  180
INEPKKRVFG SDITNYNSKR NKTDSVVGWK SSKETSVRMH NKLVDLEHEY DENELKQHPR  240
HKSTGIDFGP FAPVSVLKAR DAAFKNVKQV QDMESLASTY RPQYHNQALY DLFAHYMEAW  300
KSWLEATRKQ QTQQIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-21115648226Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879213.10.0E2F transcription factor-like E2FF isoform X2
TrEMBLW9QXB81e-145W9QXB8_9ROSA; E2F transcription factor-like E2FF
STRINGXP_010091943.11e-146(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-81DP-E2F-like protein 3