PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879350.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 110aa    MW: 12559.5 Da    PI: 8.8636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-0821571854
                    HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +  ++Lr+l+P+ + + +s K+s + +L+++++YI++L
  XP_015879350.1 21 ELVSKLRQLVPEmR-QRRSDKVSASKVLQETCNYIRNL 57
                    56689*******55.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.912357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-91776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-81873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQII ELVSKLRQLV PEMRQRRSDK VSASKVLQET CNYIRNLHRE  60
VDDLSERLSQ LLATIDADSA LVVLAFLGFG HGLIKQRLIT YVIYCEVYCA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RQLVPEMRQRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311287e-57KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879350.13e-74transcription factor PRE6
SwissprotQ9LJX18e-35PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4FW891e-43A0A2I4FW89_JUGRE; transcription factor PRE6-like
TrEMBLA0A445B3828e-44A0A445B382_ARAHY; Uncharacterized protein
STRINGGorai.006G021800.11e-42(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-30bHLH family protein