PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879653.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 331aa    MW: 37360.5 Da    PI: 7.6516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
   XP_015879653.1 14 KGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.41.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
   XP_015879653.1  67 RGNFTEDEDELIINLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.02961IPR017930Myb domain
SuperFamilySSF466891.29E-2913108IPR009057Homeodomain-like
SMARTSM007172.8E-141363IPR001005SANT/Myb domain
PfamPF002495.9E-161461IPR001005SANT/Myb domain
CDDcd001671.76E-111661No hitNo description
PROSITE profilePS5129428.64362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2865116IPR009057Homeodomain-like
SMARTSM007175.8E-1866114IPR001005SANT/Myb domain
PfamPF002497.1E-1767111IPR001005SANT/Myb domain
CDDcd001675.94E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLHSRG  120
IDPQTHRPLL VHNTSTTTTT TTTTSITKPP PPLPTSSSSI NIININDQQK SKTKSHHIQL  180
ADGAQQSAAE EEQEQEEQQD SNNTSTSTVM TGEDNDYLSH LNINLDLSIG LPNPSFQPHP  240
HHQISFSQVS DQYSNTTTAA AAAHAHHHQP ITKQQQQQVY YNGNNNYVNG AVCLCCHLGF  300
QKNQHPCACI NSVVTTTAAD HNIHFFRYYT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879653.10.0transcription repressor MYB6-like
TrEMBLA0A0L9UEB01e-103A0A0L9UEB0_PHAAN; Uncharacterized protein
STRINGXP_007137818.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-85myb domain protein 4