PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879661.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 227aa    MW: 26022.2 Da    PI: 8.8775
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.69.6e-312478358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     ++YkeClkNhAa++Gg a+DGCgEfmp+ g+ gt++alkC+AC+CHRnFHR++ +
  XP_015879661.1 24 VAVYKECLKNHAAAIGGIATDGCGEFMPA-GKLGTVEALKCSACNCHRNFHRKHIQ 78
                    679*************************9.888********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-272677IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-292776IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4852776IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-202778IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-27149223IPR009057Homeodomain-like
SuperFamilySSF466892.69E-17156221IPR009057Homeodomain-like
TIGRFAMsTIGR015659.7E-25162218IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSSNSINPSG ERNGEIIMEE QKKVAVYKEC LKNHAAAIGG IATDGCGEFM PAGKLGTVEA  60
LKCSACNCHR NFHRKHIQPD GCDRDRDYHS SSPVFFLNHN NDNNAAGKKP IRWGHQNAVI  120
LGSSQQAWHP TKPSFEVSYK NKSGDDDDDD DQVHEKEKVM MRKRFRTKFS QQQKEKMLKF  180
AEKVEWKIHT VEDSEVQQFC QEVGIKRSVL KVWMHNNKHN FANKNRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-191632201875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879661.11e-172zinc-finger homeodomain protein 4-like
TrEMBLA0A2H5NG781e-64A0A2H5NG78_CITUN; Uncharacterized protein
TrEMBLV4SLC91e-64V4SLC9_9ROSI; Uncharacterized protein
STRINGXP_006466561.16e-66(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-56homeobox protein 31