PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015879796.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 395aa MW: 45305 Da PI: 6.2704

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015879796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.6	1.3e-26	280	367	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 rW++ ev+aLi++r ++e++++ + +k Wee+s+ m g++r++k+Ckekwen+nk++k+ +++ek+r ++++ss pyf++le XP_015879796.1 280 RWPEGEVQALIAVRASLEHKFQITGSKRSIWEEISIGMCNMGYNRTAKKCKEKWENINKYFKRSAASEKNRdfANGKSSGRPYFHDLE 367 8*******************************************************************966699********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0042	277	339	IPR001005	SANT/Myb domain
Pfam	PF13837	4.5E-18	279	367	No hit	No description
CDD	cd12203	3.89E-26	279	343	No hit	No description
PROSITE profile	PS50090	6.922	280	337	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MEVFSGDRQI PNPDDFPLHI APFPEPTDIL YAHPTALIHS SGITDHPISL PQKLRPIRCN 60 VRSSVSGDLE KGLLLSDEVC SINRELELEV KVETSGEAPN GVGLGDPVQV GSGTVAEGSD 120 PNGRERVVED ETSSPSDDSS DDYSTWSLEE PTNRKRSRRR RRKSRRKLEA FLENLVMKVM 180 EKQEQMHKQL IEMIEKREKE RIIREEAWMQ QEMERLKRDE EARAQETSRN LALISLVQNL 240 MGQEIQIPQI QIPQVQPVVS PGTDDSHQKE MKCCDPNNKR WPEGEVQALI AVRASLEHKF 300 QITGSKRSIW EEISIGMCNM GYNRTAKKCK EKWENINKYF KRSAASEKNR DFANGKSSGR 360 PYFHDLELLY KNGFVHPRNY FSITNNENEA KNLYD

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MEVFSGDRQI PNPDDFPLHI APFPEPTDIL YAHPTALIHS SGITDHPISL PQKLRPIRCN  60
VRSSVSGDLE KGLLLSDEVC SINRELELEV KVETSGEAPN GVGLGDPVQV GSGTVAEGSD  120
PNGRERVVED ETSSPSDDSS DDYSTWSLEE PTNRKRSRRR RRKSRRKLEA FLENLVMKVM  180
EKQEQMHKQL IEMIEKREKE RIIREEAWMQ QEMERLKRDE EARAQETSRN LALISLVQNL  240
MGQEIQIPQI QIPQVQPVVS PGTDDSHQKE MKCCDPNNKR WPEGEVQALI AVRASLEHKF  300
QITGSKRSIW EEISIGMCNM GYNRTAKKCK EKWENINKYF KRSAASEKNR DFANGKSSGR  360
PYFHDLELLY KNGFVHPRNY FSITNNENEA KNLYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	166	RKRSRRRRRKSRRK
2	153	167	RKRSRRRRRKSRRKL
3	154	167	KRSRRRRRKSRRKL
4	157	165	RRRRRKSRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015879796.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015879796.1	0.0	trihelix transcription factor GT-2
TrEMBL	A0A2P5EXN0	1e-126	A0A2P5EXN0_TREOI; Octamer-binding transcription factor
STRING	XP_010087663.1	1e-119	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11112	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-33	Trihelix family protein