PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879844.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 542aa    MW: 59088.7 Da    PI: 9.1438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27252312259
                     --SS-EEEEEEE--TT-SS-....EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefp....rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs++p     +YY+Ct+++Cpvkkkvers+ +++++ei+Y+g+Hnhe
  XP_015879844.1 252 DDGYNWRKYGQKQVKGSNCPvkkkYGYYKCTHPNCPVKKKVERST-QGQITEIIYKGQHNHE 312
                     8******************9443347*******************.9**************8 PP
2WRKY107.28.4e-34435493159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  XP_015879844.1 435 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 493
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.072246314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-23247315IPR003657WRKY domain
SuperFamilySSF1182903.01E-21250314IPR003657WRKY domain
SMARTSM007748.4E-28251313IPR003657WRKY domain
PfamPF031061.5E-20252312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37420495IPR003657WRKY domain
SuperFamilySSF1182901.44E-29427495IPR003657WRKY domain
PROSITE profilePS5081139.192430495IPR003657WRKY domain
SMARTSM007749.6E-40435494IPR003657WRKY domain
PfamPF031061.9E-26436493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAKNEDPQRV SFSAPQHPAL PPTRPTIALP PRPSMETLFT GGAGASPGPM TLVSSFFSDN  60
HPDWEYRSFS QLLAGAIASP MAAAAARPPT SFFTDNTPND GGSLKEGGVA TVVVDKNSGF  120
KQSRPMNLVV ARSPLFTVPP GLSPSGLLNS PGFFSPQSPF GMSHQQALAQ VTAQAALAQS  180
QLQLQAEYHN SLAAVPTESM AHDSSFISND ASQEQAVPST INPRSSLKET TGVSISDRKY  240
QSPPLATDKS GDDGYNWRKY GQKQVKGSNC PVKKKYGYYK CTHPNCPVKK KVERSTQGQI  300
TEIIYKGQHN HEQPQSNKRA KDAGDQNGNA NSQAKPEISS QNRAGHVNRT IETVPSQLGL  360
ERDQEFTQTD PLQVPGSSDS EELADTEVRE DEGDADKPNA KRRNVDVGTT EVALSHKTVT  420
EPKIIVQTRS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTSAGCNVRK HVERASTDPK  480
AVITTYEGKH NHDVPAARNS SHNTANNNGQ QLKPVRVTAE KHSLLKDQRP VLLQLKEEQI  540
IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40252496878Probable WRKY transcription factor 4
2lex_A2e-40252496878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879844.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6757081e-107JN675708.1 Prunus salicina WRKY domain class transcription factor mRNA, complete cds.
GenBankKF2635601e-107KF263560.1 Prunus avium tetraploid rootstock Y1 WRKY domain class transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928884.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-147WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLG8HZG70.0G8HZG7_9ROSA; WRKY domain class transcription factor
STRINGXP_008230819.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-137WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]