PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880025.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YC
Protein Properties Length: 103aa    MW: 11863.4 Da    PI: 8.5021
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC29.51.6e-095696238
           NF-YC  2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkm 38
                    l+ fw++q   + + + +k +++lPlarik+++k+d dvk+
  XP_015880025.1 56 LELFWNQQnyeMRNGSVVKsQNQLPLARIKRVMKSDGDVKV 96
                    789***9987777777788789*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.02E-51395IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-67495IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MNPSRNFRSS NPNHRNPNVL PMGSLMLPYP PPLTTNIEDA EESSESQFDQ LQKHNLELFW  60
NQQNYEMRNG SVVKSQNQLP LARIKRVMKS DGDVKVAFLL CSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880025.12e-71nuclear transcription factor Y subunit C-1-like
TrEMBLW9SQ522e-20W9SQ52_9ROSA; Nuclear transcription factor Y subunit C-2
STRINGXP_010108900.13e-21(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.28e-07nuclear factor Y, subunit C4