PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880205.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 217aa    MW: 24261.6 Da    PI: 8.4899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
   XP_015880205.1 13 KGAWSKQEDQKLIDYITTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60
                     79********************************************97 PP
2Myb_DNA-binding52.51.1e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
   XP_015880205.1  66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      899*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23462IPR009057Homeodomain-like
PROSITE profilePS5129416.477860IPR017930Myb domain
SuperFamilySSF466892.85E-2812107IPR009057Homeodomain-like
SMARTSM007174.8E-131262IPR001005SANT/Myb domain
PfamPF002498.9E-151360IPR001005SANT/Myb domain
CDDcd001671.00E-101560No hitNo description
PROSITE profilePS5129425.47461115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2563116IPR009057Homeodomain-like
SMARTSM007172.8E-1565113IPR001005SANT/Myb domain
PfamPF002494.3E-1566110IPR001005SANT/Myb domain
CDDcd001673.78E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRNPCCEKEG TTKGAWSKQE DQKLIDYITT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIAKGI  120
DPNNHRLNQN YKSPPPPQMD LVSSGGATPP GSVMSHACKP IVENDRASDD AASCLEEEET  180
SGNHITTKLN LDLTIAFPSP SAKMETINTF PTLVLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121156108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880205.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880205.11e-163transcription factor MYB3-like
RefseqXP_015880206.11e-163transcription factor MYB3-like
SwissprotQ388513e-77MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A067JT031e-102A0A067JT03_JATCU; MYB family protein
STRINGXP_008381316.11e-100(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-79myb domain protein 6