PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880244.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 310aa    MW: 34400.2 Da    PI: 6.1022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.7e-181766255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  XP_015880244.1 17 RSKHSETEQRRRSKINERFQILRDLIPQD----DQKKDKASFLLEVIEYIRFLQ 66
                    899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-231287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-191286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-181369No hitNo description
PROSITE profilePS5088816.9071565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-151766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-132171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMKCLIEVDG KNREKNRSKH SETEQRRRSK INERFQILRD LIPQDDQKKD KASFLLEVIE  60
YIRFLQEKLN MYEGSYPGWS SEPTKLTPWR NQHGPTPTES FVDHPQVIKS DSGLQNNVSV  120
SPSMLCNAPN LVETELGSTV VYKSLDHLPG SAGQVAPLNV QQPIFDSIGR GGVPTQPLQE  180
SVSDAVNIDS QPQQPELWSG RHTTDCSVLN NTPNFQEKSR SVSISSAYSK GILDTLTQAL  240
RSSGMDLSQA SISVQIDVGN GADNGVTSMA SSSKDHVNQT MNSQVMAHTQ VTSSSDQFEQ  300
AHKRLRTEEN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880244.10.0transcription factor BIM3-like isoform X2
TrEMBLA0A2P5E9A71e-144A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_009378274.11e-122(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-59BES1-interacting Myc-like protein 2