PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880278.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 193aa    MW: 21004 Da    PI: 6.2979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.19.9e-162078191251
            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                     + +L+++p   EalaVn+v++lhrll++++++e+    vL+ +k ++Pk+v+vveqea+hn++
  XP_015880278.1  20 PGMLDIRPadVEALAVNSVFELHRLLARPGAIEK----VLSSIKAMKPKIVTVVEQEASHNGP 78 
                     56899998889***********************....**********************976 PP
2GRAS123.91.8e-3890185280374
            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++  +++++lgr+i+nvvaceg er+erhetl +Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW
  XP_015880278.1  90 SQDLIMSEVYLGRQICNVVACEGPERFERHETLTQWRARLGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAW 184
                     5678899999************************************************************************************* PP

            GRAS 374 r 374
                     +
  XP_015880278.1 185 Q 185
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.5331164IPR005202Transcription factor GRAS
PfamPF035143.4E-132078IPR005202Transcription factor GRAS
PfamPF035146.4E-3690185IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGMHVEGSHF IPTVHAWVCP GMLDIRPADV EALAVNSVFE LHRLLARPGA IEKVLSSIKA  60
MKPKIVTVVE QEASHNGPES SSTTGLAPPS QDLIMSEVYL GRQICNVVAC EGPERFERHE  120
TLTQWRARLG SAGFDPVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA  180
TSAWQLSEST QSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-1619184192377Protein SCARECROW
5b3h_D7e-1619184192377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928681.11e-138DELLA protein GAI-like
SwissprotQ8S4W75e-87GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A059AEG81e-97A0A059AEG8_EUCGR; Uncharacterized protein
TrEMBLV4ST109e-98V4ST10_9ROSI; Uncharacterized protein
STRINGXP_010032696.12e-98(Eucalyptus grandis)
STRINGXP_006430617.12e-98(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.19e-84GRAS family protein