PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880300.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 258aa MW: 29543 Da PI: 5.0699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.3	2.4e-43	4	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL+ k+eg++ +++vi+ +diy+++PwdLp ++++ ++++fF++r++++a+g r+nr t++gyWkatg XP_015880300.1 4 LPPGFRFYPTEEELVSFYLHSKLEGTRedlnQVMDRVIPVLDIYDYNPWDLPLlsgeLCRGDPEQCFFFIERQESEARGGRPNRLTSTGYWKATG 98 79**********************966643344579999*******54565444566799************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++s++++ +g+k+t+vfy grap+g+kt+W m+ey++ XP_015880300.1 99 SPNNIYSSDNRIIGVKRTMVFYIGRAPSGRKTEWKMNEYKA 139 *************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-46	3	171	IPR003441	NAC domain
PROSITE profile	PS51005	46.621	4	171	IPR003441	NAC domain
Pfam	PF02365	9.4E-22	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEDLPPGFRF YPTEEELVSF YLHSKLEGTR EDLNQVMDRV IPVLDIYDYN PWDLPLLSGE 60 LCRGDPEQCF FFIERQESEA RGGRPNRLTS TGYWKATGSP NNIYSSDNRI IGVKRTMVFY 120 IGRAPSGRKT EWKMNEYKAT EGEAYSSSVT TSATTLPPLR HELSVCRVYK KSKCLRAFDR 180 RPQMKEVRYP TTQQVHSDED QVSIVSGNPA PVGEKRISSS SESSSSGEHG QLLQTEGVLP 240 MSVDNEALWY WDDQLNWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-33	4	171	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-33	4	171	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-33	4	171	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-33	4	171	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-33	4	171	20	168	NAC domain-containing protein 19
3swm_B	5e-33	4	171	20	168	NAC domain-containing protein 19
3swm_C	5e-33	4	171	20	168	NAC domain-containing protein 19
3swm_D	5e-33	4	171	20	168	NAC domain-containing protein 19
3swp_A	5e-33	4	171	20	168	NAC domain-containing protein 19
3swp_B	5e-33	4	171	20	168	NAC domain-containing protein 19
3swp_C	5e-33	4	171	20	168	NAC domain-containing protein 19
3swp_D	5e-33	4	171	20	168	NAC domain-containing protein 19
4dul_A	5e-33	4	171	17	165	NAC domain-containing protein 19
4dul_B	5e-33	4	171	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880300.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I4HD09	1e-116	A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like
STRING	VIT_08s0007g02940.t01	1e-101	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-71	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]