PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880546.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 455aa    MW: 51257.6 Da    PI: 9.0376
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.24e-481352982132
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa...sec...eaesssss 81 
                     + kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl ++k+aik+l++t         s   +   sec   e+e+++++
  XP_015880546.1 135 PMKKDRHSKIYTAQGLRDRRVRLSIEIAREFFDLQDMLGFDKASKTLEWLLSKSKKAIKDLARTklsstscakS---SsltSECegdEEEQEQEQ 226
                     679*************************************************************8887665433...145588885433333333 PP

             TCP  82 asnsssg......................kaaksaakskksqk.saasalnlakesrakarararertrekmri 132
                     ++n+  +                      k  k+++ +k +++  a ++l  akesrakarararertrekm++
  XP_015880546.1 227 EDNE--QannevvdnneiilegtvvskrkKMLKEKNMRKLDEAaAALQHLRTAKESRAKARARARERTREKMCT 298
                     3333..3558999***********998752223333333333303334677888******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-44136297IPR005333Transcription factor, TCP
PROSITE profilePS5136935.975137195IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483278295IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MFSSTNTLNP FPQQQQQQQY YFPPSSHPHH LPPPSPPILN QEVAATATVT PTASATVSDD  60
ILFHHDPLSA PFLLNISPLI PDTSVINLGV SNSAGTMTKQ DMCNLYGGHN HHHHDHHHHH  120
HHLDGGVPRF LPRKPMKKDR HSKIYTAQGL RDRRVRLSIE IAREFFDLQD MLGFDKASKT  180
LEWLLSKSKK AIKDLARTKL SSTSCAKSSS LTSECEGDEE EQEQEQEDNE QANNEVVDNN  240
EIILEGTVVS KRKKMLKEKN MRKLDEAAAA LQHLRTAKES RAKARARARE RTREKMCTVL  300
KIHDPKKCPP TLHPSSTNPS SSQILNQLRT MNQFHGCERS SPKIVATAEI IEAIQESSSS  360
IMSRRKLQKP TLISSFQQQH HHHQQLNEIS SKGGQTSNDN NNTNNNTNSM FCPNLPQNWD  420
INSPLIATTR PSFRTITNMN LSTELQIYGK TMGGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-15142195154Putative transcription factor PCF6
5zkt_B9e-15142195154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-32AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880546.10.0transcription factor DICHOTOMA-like
RefseqXP_024928169.10.0transcription factor DICHOTOMA-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.26e-28TCP family protein