PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880547.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family RAV
Protein Properties Length: 310aa    MW: 35384.7 Da    PI: 6.5221
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.76.9e-141967155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV    ++grW A+I++      ++r++lg+f  +eeAa a++ a+ k++g
  XP_015880547.1 19 SKYKGVV-PQSNGRWGAQIYEK-----QQRVWLGTFNKEEEAALAYDIAAIKFRG 67
                    89****7.7779*********4.....6************************998 PP
2B390.91e-28157255195
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     f+kv tpsdv+k++r+v+pkk ae h    ++k  e++ l++ed  g+ W+++++++ +s++yvltkGW++Fvk+++Lk+gD+v F++ ++  e+
  XP_015880547.1 157 FEKVVTPSDVGKLHRMVIPKKQAELHfpldSEKGGEGVILSFEDNVGKIWRFRYCFWSSSQSYVLTKGWSRFVKEKKLKAGDVVSFQR-WTlPEE 250
                     99*************************99844555899*************************************************4.666777 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +l++ 
  XP_015880547.1 251 KLFID 255
                     77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-251977No hitNo description
PfamPF008473.7E-81967IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-171975IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-202076IPR001471AP2/ERF domain
SMARTSM003808.6E-282081IPR001471AP2/ERF domain
PROSITE profilePS5103219.4932075IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-37149263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-30152261IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-27155244No hitNo description
PfamPF023622.5E-25157256IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521157260IPR003340B3 DNA binding domain
SMARTSM010199.8E-19157259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEDSETGWLE TNSKKLPSSK YKGVVPQSNG RWGAQIYEKQ QRVWLGTFNK EEEAALAYDI  60
AAIKFRGLNS ITNFDETKKN KDGLETIFLN SHTKTEIVEM LRSHIYGAEL QQFKQKVNEH  120
EAAAAAAGCS SSSREIESHS FAKSINGNHN QRPEWLFEKV VTPSDVGKLH RMVIPKKQAE  180
LHFPLDSEKG GEGVILSFED NVGKIWRFRY CFWSSSQSYV LTKGWSRFVK EKKLKAGDVV  240
SFQRWTLPEE KLFIDCRHGK EESRGDGGGE VEEVYRPVQV ERVVKLFGVE IQENCSSNFC  300
IDDEESTRES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-411542585112B3 domain-containing transcription factor NGA1
5os9_B4e-411542585112B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880547.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880547.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-94RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A251Q4S11e-106A0A251Q4S1_PRUPE; Uncharacterized protein
TrEMBLM5XF161e-106M5XF16_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ176751e-107(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-95related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]