PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880984.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 273aa    MW: 31374.6 Da    PI: 5.6042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v ++G  +W+  +r  g+ R++k+c++rw +yl
   XP_015880984.1 14 KGTWTPEEDRKLIAYVSRYGCWNWRQLPRFAGLQRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding55.91e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
   XP_015880984.1  67 RGNYTKEEEETIIRLHQSLGNR-WSAIAAQLP-GRTDNEVKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.005961IPR017930Myb domain
SuperFamilySSF466893.67E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-101363IPR001005SANT/Myb domain
PfamPF002494.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001671.51E-91661No hitNo description
PROSITE profilePS5129425.50662116IPR017930Myb domain
SMARTSM007175.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.5E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2669116IPR009057Homeodomain-like
CDDcd001677.89E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVRTPCCDKS GLKKGTWTPE EDRKLIAYVS RYGCWNWRQL PRFAGLQRCG KSCRLRWMNY  60
LRPNIKRGNY TKEEEETIIR LHQSLGNRWS AIAAQLPGRT DNEVKNHWHT NLKKRVQHNY  120
VTHGLEIYSN NSSNDYNIPS QEKTKNNTIS EHNNSALEDQ AALQILESST LSPGQTYSSS  180
DEVSTISTDT TFTETSTTNF AADDSNVSAY NSLETFSEFS GNFWTEPFLA DNSYIPSEFL  240
TPITDLEIFS PLFDGSSLSS THEYYMEHEV LFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880984.10.0transcription factor MYB13-like isoform X2
TrEMBLA0A2N9J0C41e-110A0A2N9J0C4_FAGSY; Uncharacterized protein
STRINGXP_010095861.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-63myb domain protein 14