PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881102.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 427aa    MW: 46708.3 Da    PI: 5.3005
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-06245340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    e+ C+ ++  ++  +C++++  lC  C  + H+       Ht++
  XP_015881102.1  2 EPLCEFCGVVRAVVYCKSDSARLCLHCDGWVHSAnslsrrHTRS 45
                    689******99*********************657788888875 PP
2zf-B_box19.81.7e-064672430
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCl 30
                      C++++ +++++ C d++  lC++C 
  XP_015881102.1 46 LLCDKCNAEPAIIRCMDDKISLCQSCD 72
                    57************************7 PP
3CCT62.71.1e-21368411144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  XP_015881102.1 368 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 411
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.56147IPR000315B-box-type zinc finger
SMARTSM003364.5E-10147IPR000315B-box-type zinc finger
CDDcd000211.08E-4347No hitNo description
PROSITE profilePS501198.9734388IPR000315B-box-type zinc finger
SMARTSM003364.14888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.684368410IPR010402CCT domain
PfamPF062031.3E-16368410IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD SARLCLHCDG WVHSANSLSR RHTRSLLCDK CNAEPAIIRC  60
MDDKISLCQS CDWNANGCMS MGHQRQTLNC YTGCPSLADF SRIWSSVLEA PSLSGFDSGW  120
GSLGSLPTDG HCDTSNVEPR NDDVGALGMV TSKLHEPEPC MKFDTWPGPS SVTPPNQNYM  180
LYCRDQAPFF AEESNHPPKD LGIHDGEDLC EAFNMDDVPL NFENDDEILS NSQGLPRCQF  240
EDGGMDCLLM EKNLSVTESN GPIENAIEAS SSVKKECVTF QSSCVGGSSS LMHAMNGGSN  300
CLLVNPTGSR NINLGFPAGQ VHSTMSLSLS NITGESSAAD YQDCGLSPSF LTGESWESTL  360
EGSCPQARDK AKMRYNEKKK TRTFGKQIRY ASRKARADTR KRVKGRFVKA GEAYDYDPSA  420
KRNFSAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881102.10.0putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A2I4GR930.0A0A2I4GR93_JUGRE; zinc finger protein CONSTANS-LIKE 12-like
STRINGGLYMA12G32221.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-107B-box type zinc finger protein with CCT domain