PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881243.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 289aa    MW: 32569.6 Da    PI: 9.7355
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix539e-1730121187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W+++ + +Liea  ++  +l+rg+l++++W+ev++++     r+   +r+ +qCk++++ l+k+yk +k++ ++     +s +p+f++l+a
  XP_015881243.1  30 CWSEDATATLIEAWGDRYLELNRGNLRQKHWQEVADAVnarhcRSARTRRTDVQCKNRIDTLKKKYKIEKARVSDSDGVYTSPWPFFTRLDA 121
                     7************************************99998899999************************99988888899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2728122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSDTGTLSP ATAPATRPAT TTPFHGREDC WSEDATATLI EAWGDRYLEL NRGNLRQKHW  60
QEVADAVNAR HCRSARTRRT DVQCKNRIDT LKKKYKIEKA RVSDSDGVYT SPWPFFTRLD  120
ALIGDNFPAA KKSSPPVAGV HRNATPPIWA LYSPVPVGPR SATLKRPAPT LPPVPLDDSS  180
SRRNFSAFAA AAIAAAEDEE TERSSIGSRR RDREREDGCR ELAQAIEKFA EIYERVEGAK  240
QKQMVELEKQ RMQFAKDLEF PRMQLFMETQ VQLQKIKRAK RSSGTDSYS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881243.10.0trihelix transcription factor ASIL2
TrEMBLW9RZ451e-136W9RZ45_9ROSA; Uncharacterized protein
STRINGXP_010104393.11e-137(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-75sequence-specific DNA binding transcription factors