PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881274.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 246aa    MW: 27645.6 Da    PI: 9.4479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-05134154323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F r  nL+ H r H
  XP_015881274.1 134 CEICGKGFQRDQNLQLHRRGH 154
                     *******************88 PP
2zf-C2H214.69.5e-05208230123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_015881274.1 208 WKCEKCSKRYAVQSDWKAHSKTC 230
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5131154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.28E-7131154No hitNo description
SMARTSM003550.076132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489132154IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SMARTSM00355260173203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-5196229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.28E-7203228No hitNo description
SMARTSM00355130208228IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNLWPLISET HWPPSMPSHR LAQSPNLAAN RPASHPDLAL ESDSCHFSSF SEFAMLRCAQ  60
AAPPPSSDSP SCQLHQDMAE EAISSGFVQN PISGGSDNPP AVKKKRNLPG TPDPEAEVIA  120
LSPKTLMATN RFLCEICGKG FQRDQNLQLH RRGHNLPWKL KQRTSKEPRK RVYVCPEKSC  180
VHNHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYKCDCG  240
TLFSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-23204245344Zinc finger protein JACKDAW
5b3h_F8e-23204245344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881274.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928763.10.0protein indeterminate-domain 12-like
SwissprotQ9ZWA61e-103IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I01e-112A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGEOX995371e-112(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]