PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881343.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 237aa MW: 27184.8 Da PI: 8.3355

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.4e-09	139	186	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + sk + ++L + + Y++sLq XP_015881343.1 139 SHSLAERLRREKINNKLRCLQDLVPGC----SKTMGMTMMLDEIISYVHSLQ 186 8*************************9....677888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.28E-8	133	190	No hit	No description
SuperFamily	SSF47459	1.05E-15	133	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	135	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.392	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	139	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-7	141	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MIINQFGPEM DSSILLKNFN TSITDYSVAN FFGCKNHHVL GHDHHHQNPT NLFDQDLPAA 60 SQSNHQLMIM NDFNESKKRK VNMEDVFSIA ASKNGLEDKE KSLKKNSLVK GNNYRSRKNN 120 NKKEEVIHVR AKRGQATDSH SLAERLRREK INNKLRCLQD LVPGCSKTMG MTMMLDEIIS 180 YVHSLQNQIE FLSTELAAAC SYQSYINIEA SRNSETYSQD PQEMEKMRAQ LLPFNMV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881343.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881343.2	1e-178	transcription factor BEE 1-like isoform X1
TrEMBL	A0A2P5EQS9	9e-54	A0A2P5EQS9_TREOI; Basic helix-loop-helix transcription factor
STRING	cassava4.1_013661m	9e-51	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14412	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	4e-40	BR enhanced expression 1