PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881405.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 238aa MW: 26906 Da PI: 7.4552

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	182.1	3.9e-56	1	237	129	374
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsle 221 +q+L R++g+psl+iT+++sp++++ el ++e+L++fA+e+g++fe +v + le+ +l+ ++++++Ea+aVn+ + + ++++l+ XP_015881405.1 1 MQELPLRNRGTPSLKITAFASPSTHHPVELGLMKENLTQFANEIGISFELEVCNFDILEQTsyTLSVFQTNENEAVAVNFPIWSSSS--QPAALP 93 8************************************************975554444422667778888****9955444..688888 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 + +L+++k+lsP++vv ++ +d+ + +F +++l+al+ y l++sl ++++ s++ +k+Er+ll+++i++ v + ++ ++ W XP_015881405.1 94 N----LLRFIKQLSPRIVVSLDRGCDRFDLPFPQHILQALQSYIILLESLdAVNV--PSDALNKIERFLLQPSIESTVLGRLRA----PDKMPLW 178 8....*****************************************55555..678899************99998....999 PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + +aGF+p+++s+++++qa++++++++ +g++ve++++slvl+W++r+L+s+SaWr XP_015881405.1 179 KTLFASAGFTPLTFSNFTETQAECVVKRTPARGFHVEKRQASLVLYWQRRELISASAWR 237 ********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.4E-53	1	237	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	23.171	1	217	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MQELPLRNRG TPSLKITAFA SPSTHHPVEL GLMKENLTQF ANEIGISFEL EVCNFDILEQ 60 TSYTLSVFQT NENEAVAVNF PIWSSSSQPA ALPNLLRFIK QLSPRIVVSL DRGCDRFDLP 120 FPQHILQALQ SYIILLESLD AVNVPSDALN KIERFLLQPS IESTVLGRLR APDKMPLWKT 180 LFASAGFTPL TFSNFTETQA ECVVKRTPAR GFHVEKRQAS LVLYWQRREL ISASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-13	1	237	128	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881405.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881405.2	1e-175	scarecrow-like protein 6
Refseq	XP_015881407.1	1e-169	scarecrow-like protein 22
Swissprot	O81316	2e-77	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2N9GGX5	1e-146	A0A2N9GGX5_FAGSY; Uncharacterized protein
STRING	XP_008238556.1	1e-145	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-80	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]