PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881507.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 322aa    MW: 35915.3 Da    PI: 6.8401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++++G+++W++I++  g+ R++k+c++rw +yl
   XP_015881507.1 14 RGQWTPEEDNKLSSYIAKHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding42.61.4e-1368110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+ +   G++ W+ Ia+ ++ gRt++++k++w++
   XP_015881507.1  68 GQFSDAEEQTIVKFHSIVGNR-WSIIAAQLP-GRTDNDVKNHWNT 110
                      7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.963965IPR017930Myb domain
SuperFamilySSF466894.4E-2911108IPR009057Homeodomain-like
SMARTSM007174.4E-141363IPR001005SANT/Myb domain
PfamPF002492.2E-171461IPR001005SANT/Myb domain
CDDcd001671.34E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.89266116IPR017930Myb domain
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PfamPF002497.3E-1268110IPR001005SANT/Myb domain
CDDcd001673.35E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA KHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQTIVK FHSIVGNRWS IIAAQLPGRT DNDVKNHWNT KLKKKLSSMG  120
IDPVTHKPIS HLIAEITTTL APPQVAHLAE AALGCFKDEM LHLLTKKRID FQLQQSNAAP  180
GNTQSNYINS KQEEKDDTIE KIKLGLSRAI QEPDILPPNK LWDSHGPTFS NFTGTCTTFP  240
ASGFQYGPSS FSNEEDGSPW NQSMCTGSTC TAGDQQGQLQ DTHDENGLES EGGKEIRNGS  300
IIFNSDGVLW DLPSDDLMNP IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141187110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881507.10.0transcription factor MYB80
SwissprotQ7XQN11e-118MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2P5BEK80.0A0A2P5BEK8_PARAD; GAMYB transcription factor
STRINGEMJ078180.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-120myb domain protein 103