PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881527.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 195aa MW: 22633.8 Da PI: 10.5265

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.3	4.3e-07	35	113	5	89
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++A + G+ v+++ s+k t+ C + g +++ k+ ++ ++r++++ t+C +++ kk+ d+ w ++ + HnHe XP_015881527.1 35 DFALTQGYMVSIRDSSKD------RYVTLACDRGGVYRKRLKTgENLRKRKSESRLTNCSFEVVGKKD-DDIWILSIKNGVHNHEA 113 577777787777776666......5789******99999994455566666777999999988777.*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	35	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEAQEHNEHT QEKKMLPPPV GTFQTREELI KHVRDFALTQ GYMVSIRDSS KDRYVTLACD 60 RGGVYRKRLK TGENLRKRKS ESRLTNCSFE VVGKKDDDIW ILSIKNGVHN HEASNDTSDH 120 PSCRRFSEEE VKLIRELTAA GKRPRQILKA LRQKNPNLVS DSRNVYNVKA KIRREMVSAQ 180 RNSITTFMGR HHSFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881527.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928609.1	1e-124	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2
TrEMBL	A0A061E3B5	1e-104	A0A061E3B5_THECC; Uncharacterized protein (Fragment)
STRING	EOX99450	1e-105	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13278	3	4