PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881673.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 362aa    MW: 41025.2 Da    PI: 6.3189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-153683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_015881673.1 36 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNAGLQRCGKSCRLRWINYL 83
                     678*******************************************97 PP
2Myb_DNA-binding50.16.3e-1689133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E++l+v+++ +lG++ W+ Ia++++ gRt++++k++w++ 
   XP_015881673.1  89 RGAFSSQEEDLIVHLHSMLGNR-WSQIAARLP-GRTDNEIKNFWNST 133
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-232986IPR009057Homeodomain-like
PROSITE profilePS5129417.5463183IPR017930Myb domain
SuperFamilySSF466895.35E-2834130IPR009057Homeodomain-like
SMARTSM007174.1E-113585IPR001005SANT/Myb domain
PfamPF002491.1E-133683IPR001005SANT/Myb domain
CDDcd001671.04E-93983No hitNo description
PROSITE profilePS5129424.86384138IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2587139IPR009057Homeodomain-like
SMARTSM007174.5E-1588136IPR001005SANT/Myb domain
PfamPF002491.8E-1489133IPR001005SANT/Myb domain
CDDcd001672.51E-1091134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MRKPDSMGIK DRALVNNNSN TNNNNNNNNN KSKLRKGLWS PEEDEKLMRY MLSNGQGCWS  60
DIARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSSQEEDLI VHLHSMLGNR WSQIAARLPG  120
RTDNEIKNFW NSTLKKRLKN NNNNNSTSSP NDSNYSSDPL DVIASGGGMM PNIHDHDMIS  180
MHMDSSCSSS ASMQATTGNY QLDPFSFLDS RYDLTHADSL LNTIPSCLEQ VGVGNGLIGD  240
YYNGIDHHQD QPEKIIMGFE RDLCLPPLES RSNIELEINN NNNNGQIDQV KSNIDHLNNS  300
CFNNTDFSFK GDHHHHHHHH QGSNMFGFGN HGQGENLRMG EWDLEGLMQD ISSFPFLDFQ  360
VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-263413825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881673.10.0transcription factor MYB83
SwissprotQ9C6U12e-85MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A2N9FKZ21e-138A0A2N9FKZ2_FAGSY; Uncharacterized protein
STRINGPOPTR_0009s06630.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-63myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]