PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881708.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 322aa    MW: 35495.5 Da    PI: 9.0809
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.78.3e-33150206158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA+rR+Rg+gGrF
  XP_015881708.1 150 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHQHAMRRARGCGGRF 206
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-37148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.52149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-28151206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24152174IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860154174IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMPSKPKNDN QQLEQGAQNV LQSTAFSQPW WRTVGSDVPM SESTPKSSLV EHQNGSLLNG  60
AMQSQTNDGN SGLEHHVKGV PSSTPQTVNE HLDPNSQMEL VGHSIVLTSY PYGEPQYGTM  120
LTPYGPQPMV HPQLFGMHPG RMPLPLEMEE EPVYVNAKQY HGILRRRQSR AKAELEKKVI  180
KVRKPYLHES RHQHAMRRAR GCGGRFLNTK KLENDVANST SEKGTNSDAS LSAQCVNGSG  240
SKRFSCTSDG NLDSSSDQQQ GIRSRVQEMQ KAQAFSYGNG NGNGLSSTYQ TQFSDGKEGD  300
CLGRQRESMR LNSSPHGAIP IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20150210262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881708.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_015881709.10.0nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLA0A2P5DLP21e-134A0A2P5DLP2_PARAD; Nuclear transcription factor Y subunit A
STRINGEOX966771e-121(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.35e-41nuclear factor Y, subunit A1