PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882140.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 128aa    MW: 14978.4 Da    PI: 10.1039
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELS+LCdae+a++ifs+ gk+y y+s
  XP_015882140.1  9 KRIENPTTRQVTFSKRRNGLLKKAFELSILCDAEIALLIFSPAGKVYQYAS 59
                    79***********************************************86 PP
2K-box31.85.8e-12841261254
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqL 54 
                     ++ e +++e++  k+ +enL+r +Rhl GedL  L +keL+qL
  XP_015882140.1  84 RTVEFWRNEIEETKRATENLERRLRHLSGEDLLMLGMKELKQL 126
                     56899*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.973161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-33280IPR002100Transcription factor, MADS-box
CDDcd002651.21E-40270No hitNo description
PRINTSPR004041.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.6E-886126IPR002487Transcription factor, K-box
PROSITE profilePS512977.57686128IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGRGKVELKR IENPTTRQVT FSKRRNGLLK KAFELSILCD AEIALLIFSP AGKVYQYASH  60
DMDRIIGRYR REVGLPESDS LRCRTVEFWR NEIEETKRAT ENLERRLRHL SGEDLLMLGM  120
KELKQLIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-25169169Myocyte-specific enhancer factor 2B
1tqe_Q6e-25169169Myocyte-specific enhancer factor 2B
1tqe_R6e-25169169Myocyte-specific enhancer factor 2B
1tqe_S6e-25169169Myocyte-specific enhancer factor 2B
6c9l_A6e-25169169Myocyte-specific enhancer factor 2B
6c9l_B6e-25169169Myocyte-specific enhancer factor 2B
6c9l_C6e-25169169Myocyte-specific enhancer factor 2B
6c9l_D6e-25169169Myocyte-specific enhancer factor 2B
6c9l_E6e-25169169Myocyte-specific enhancer factor 2B
6c9l_F6e-25169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882140.11e-89MADS-box transcription factor 6-like
SwissprotQ8LLR17e-41MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLW9QX823e-68W9QX82_9ROSA; Agamous-like MADS-box protein AGL16
STRINGXP_010086970.14e-69(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-39AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]