PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882172.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 198aa    MW: 22899.7 Da    PI: 9.6384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054.1e-33119177159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk+s+fprsYYrCt++gC+vkk+++r ++d++vv++tYeg H+h+
  XP_015882172.1 119 LDDGYRWRKYGQKTVKNSNFPRSYYRCTHRGCNVKKQIQRLSKDEEVVVTTYEGIHTHP 177
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-33104177IPR003657WRKY domain
SuperFamilySSF1182901.7E-29111178IPR003657WRKY domain
PROSITE profilePS5081129.597114179IPR003657WRKY domain
SMARTSM007741.2E-38119178IPR003657WRKY domain
PfamPF031064.5E-27120177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MENYHMLLSS STPPSVVSPA SSAILNMENN GRMFTHFLGN NNTTDQMGVR ESKFDLHHQH  60
HHHMIQEDHV DANNKLESGS SGRPSSKTKS SSGKKELSDK MMMKKHKYAF QTRSQVDILD  120
DGYRWRKYGQ KTVKNSNFPR SYYRCTHRGC NVKKQIQRLS KDEEVVVTTY EGIHTHPIEK  180
SAENFDEILK QMQTYATF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27109176774Probable WRKY transcription factor 4
2lex_A2e-27109176774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882172.11e-150probable WRKY transcription factor 75
TrEMBLA0A386IQ221e-111A0A386IQ22_ZIZJJ; WRKY transcription factor 56
STRINGXP_010250654.11e-58(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-54WRKY DNA-binding protein 75