PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882228.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 169aa MW: 18520.1 Da PI: 8.0543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.9	1.2e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ s+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_015882228.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVISMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_015882228.1 108 LAQAE 112 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.984	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKESGRKQGA ISPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LPEHQRSDAV ISMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLALAQ AEVVHMRMRQ 120 CPSTSNQAGN SPENGSPSTK HMASSQTKSF FGMDMMVDQA NMGESLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-50	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-50	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882228.1	1e-125	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	8e-75	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A5BKW9	1e-101	A5BKW9_VITVI; Uncharacterized protein
STRING	VIT_19s0027g01120.t01	1e-102	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-70	LOB domain-containing protein 4