PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882253.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 258aa MW: 29482.2 Da PI: 8.4807

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.6	3.7e-47	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdee++ +yL++kv +l++ +i+e++++k++PwdLp + +e yfFs+++ ky++gkr+nr+t+sgyWkatg+dk+ +s+ XP_015882253.1 14 LPPGFRFQPTDEEIIFQYLRRKVFCCPLPA-CIIPEINVCKYDPWDLPGDL---GQERYFFSNKEAKYRNGKRTNRTTNSGYWKATGSDKRFVSS 104 79***********************999.78***********543...5799**************************9998887 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vglkktLvf++g+ p+g++t+Wvmhey+l XP_015882253.1 105 rMNHIVGLKKTLVFHRGKPPHGSRTEWVMHEYSL 138 46778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-53	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	52.959	14	173	IPR003441	NAC domain
Pfam	PF02365	3.1E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEKFNFLRDG VIRLPPGFRF QPTDEEIIFQ YLRRKVFCCP LPACIIPEIN VCKYDPWDLP 60 GDLGQERYFF SNKEAKYRNG KRTNRTTNSG YWKATGSDKR FVSSRMNHIV GLKKTLVFHR 120 GKPPHGSRTE WVMHEYSLID AAGSKTCTKT MEMHAQNSLN QTENWVLCRI FMRKRNAKDG 180 EEITHENNFK DYNKAGQVGV EQPRLLISNF VMGCKNNGHL GPDQISCSSS SSSSSSITEI 240 SEVSSSEADC HEESSTNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	12	178	15	170	NO APICAL MERISTEM PROTEIN
4dul_A	1e-43	12	178	15	170	NAC domain-containing protein 19
4dul_B	1e-43	12	178	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882253.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866948.1	0.0	NAC domain-containing protein 83-like
Refseq	XP_015882253.1	0.0	NAC domain-containing protein 83-like
Swissprot	Q9FY93	7e-77	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0M4FP12	1e-94	A0A0M4FP12_MANES; NAC transcription factors 34
STRING	cassava4.1_014491m	2e-95	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-78	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]