PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882268.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 330aa MW: 37197.4 Da PI: 8.2306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_015882268.1 179 SHSLAERVRREKISERMKMLQKLVPGC----DKVTGKALMLDEIINYVQSLQ 226 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	173	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-9	173	230	No hit	No description
PROSITE profile	PS50888	15.65	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-17	175	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	179	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-11	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAAFSYSHHP FLLDSVLLPN TPIKMSGFMD ETNLNTNFFS QFYPSQHFQE IPLDVRLEET 60 SCLDHSSRIA LSDNEPSMTK KHSTESSFVV DKLESGEQVT QEVPTMDKKR KNRNGSSLSS 120 AQSKDARENK GKRQKKSNDA KKDEEKKLKC DKNGEAKSRE EPSRDYIHVR ARRGQATDSH 180 SLAERVRREK ISERMKMLQK LVPGCDKVTG KALMLDEIIN YVQSLQNQVE RLSSMASPVQ 240 SIPQCSPTQQ QTTAFADTAT TTTSNNNNNT NFTTATNFPH VGNSAPLLLP QEQRPNAFSH 300 VNGSLLWEVE DQRQNFLSPS GFSNNMCTFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882268.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882268.1	0.0	transcription factor bHLH137 isoform X2
TrEMBL	A0A2I4FLK3	1e-131	A0A2I4FLK3_JUGRE; transcription factor bHLH137-like isoform X1
STRING	EMJ10483	1e-131	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	5e-47	bHLH family protein