PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882333.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 555aa    MW: 61458.2 Da    PI: 4.7628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-16421221399
                     TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s  l lp kfa+++ +++   ++  +led+sg +Wev++  ++ +g   +++GW++F  a++L++g f+vF++   ++ +l+vk+f++
  XP_015882333.1  42 SEVLFLPPKFARSMpELI---NQNAILEDSSGSQWEVTI--SNVDGFLAFQQGWNDFSLAHNLEVGYFLVFQYL--MKSHLFVKIFDT 122
                     34599******9995444...557***************..*******************************76..456679****97 PP
2B342.89.1e-144875552999
                     -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +k   + ++l+d++ r W+v +    +s+ +vlt+GW+ F kan ++ +D +vF ++++s++ ++v+++rk
  XP_015882333.1 487 SKMDRTVVVLRDPERRLWSVMY--HETSSYCVLTSGWEAFTKANSVQPKDECVFVVENDSKGIYKVRIVRK 555
                     455567899*************..*******************************9999999999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1924125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2025125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.35130123IPR003340B3 DNA binding domain
CDDcd100171.19E-1731121No hitNo description
SMARTSM010196.5E-1132123IPR003340B3 DNA binding domain
PfamPF023621.2E-1332122IPR003340B3 DNA binding domain
SMARTSM010190.46461553IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-12477554IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-11485555IPR003340B3 DNA binding domain
CDDcd100171.02E-10491554No hitNo description
Gene3DG3DSA:2.40.330.101.7E-11491554IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8494555IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MCSKEEACVQ CIQNCLKFHG KKEESSPAVT SFFKILIGPK FSEVLFLPPK FARSMPELIN  60
QNAILEDSSG SQWEVTISNV DGFLAFQQGW NDFSLAHNLE VGYFLVFQYL MKSHLFVKIF  120
DTSGCEKLDF SERSNQRKRK RDDGDTVKEN PRHTNDRSKM NKQDSSSSPK SGSNAKISEG  180
LNEVNNAEEA PSVSPNLSNG SNMSGRRKVE SEPENIDDTF QMVYRDLGTQ QGEDRCPVID  240
LSDFEMWNDK SGGVAPQHVD QSMRSQNEVS MTDNNPAAKD AACLSVPLDA SNSEKVENCS  300
NDMDRKVISD NDTCIDEASG HCSPVSSVKP QENVKSLRKF TKCQLAEGSD SEPLSGKNRG  360
SLSQKVESSI NDSCQSAKSK FTKTPSSSVG TQNYLSVKKE LIENTSDACE THGESSKVKD  420
EHQASSDKIV EENNDVDSDL EIKTETDDSV GIPPDSSDVP SVVATAGSEP FLELPACLPY  480
TSIMGRSKMD RTVVVLRDPE RRLWSVMYHE TSSYCVLTSG WEAFTKANSV QPKDECVFVV  540
ENDSKGIYKV RIVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882333.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_024929155.10.0B3 domain-containing protein Os02g0598200-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein