PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882497.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 175aa    MW: 19364.5 Da    PI: 9.6477
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.52e-3280136158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+k+  ksrkpylheSRh hAlrR+Rg+gGrF
  XP_015882497.1  80 EEPVFVNAKQYRGILRRRQSRAKAESENKV-VKSRKPYLHESRHLHALRRARGCGGRF 136
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-3678139IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.97279139IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-2781136IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-2282104IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686084104IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-22113136IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSNPGITTPN VQYATPSHLG AGHAVAPAAY PYPDPYYRSI FAPYDAQPYP PQPYGGQPMV  60
HLQLMGIQQA GVPLPSDAVE EPVFVNAKQY RGILRRRQSR AKAESENKVV KSRKPYLHES  120
RHLHALRRAR GCGGRFLNSK KDENQENEVA SGDNSQQHIN LNSDKNERAS SDGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2079144166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882438.11e-128nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP13e-67NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2I4GVD21e-110A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7
STRINGXP_006468304.11e-107(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-54nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]