PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882629.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 350aa MW: 38578.9 Da PI: 6.5838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	227	270	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR+++ ++ L++llP++ kK++ a++Le+A +Y+k Lq XP_015882629.1 227 ALARQRRQKLSDKTRYLQKLLPWD-----KKMNIATMLEEAYKYVKFLQ 270 567******************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.96	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.09E-8	224	273	No hit	No description
SMART	SM00353	9.9E-7	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-10	226	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-10	227	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-6	227	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MERDLLLHSG GFSQHQSFPV TAGGDTSMDD PSSMDAMFSG ISLLSWLTTS SNPDIDFYLP 60 INPHPNNIPI PLYSSSFIPY SVSPSSSSTF GFFPDLVASQ TLKLPKLEPS LSLSLDDSPT 120 PTTPAVFSEP PLNFMPTDSL LFHHLPDLLS LDPLTDSSPP PPSLLSPFHK RRRLDSATTR 180 HENHSLTLNS FPLPNYATPF TPSPELDDEA TASSFSSPPV MIPRSSALAR QRRQKLSDKT 240 RYLQKLLPWD KKMNIATMLE EAYKYVKFLQ AQLTALHSMP SHSSIPIPVR GGDLGSVFGI 300 LGRLNRNQLL QVLVNSPVAQ SLLCSQGCCV FSVEQLDILK KTHKQKDGDY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MERDLLLHSG GFSQHQSFPV TAGGDTSMDD PSSMDAMFSG ISLLSWLTTS SNPDIDFYLP  60
INPHPNNIPI PLYSSSFIPY SVSPSSSSTF GFFPDLVASQ TLKLPKLEPS LSLSLDDSPT  120
PTTPAVFSEP PLNFMPTDSL LFHHLPDLLS LDPLTDSSPP PPSLLSPFHK RRRLDSATTR  180
HENHSLTLNS FPLPNYATPF TPSPELDDEA TASSFSSPPV MIPRSSALAR QRRQKLSDKT  240
RYLQKLLPWD KKMNIATMLE EAYKYVKFLQ AQLTALHSMP SHSSIPIPVR GGDLGSVFGI  300
LGRLNRNQLL QVLVNSPVAQ SLLCSQGCCV FSVEQLDILK KTHKQKDGDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	173	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882629.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882629.1	0.0	transcription factor bHLH117

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13426	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-19	bHLH family protein