PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882876.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 1103aa    MW: 124567 Da    PI: 7.885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09282326246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+eEd+ l+ +v++ G  +W  Ia  +g++Rt+ qc  r+q 
   XP_015882876.1 282 NPWTAEEDKTLLFLVQERGISNWFDIALSLGTNRTPFQCLARYQR 326
                      58*****************************************96 PP
2Myb_DNA-binding40.85e-13334378146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +  WT++Ed +l  av+ +G g+W ++a+ +  gRt+ qc +rw k
   XP_015882876.1 334 KSEWTKDEDAKLRSAVEYFGEGDWQSVASVLE-GRTGTQCSNRWKK 378
                      578*****************************.***********98 PP
3Myb_DNA-binding45.12.3e-14388431246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grWT++Ed++l  a  ++G+++Wk+ a+ ++ gRt+ qc++rw +
   XP_015882876.1 388 GRWTPDEDKRLTVAQMLFGPKNWKKTAQFVP-GRTEVQCRERWVN 431
                      79*****************************.***********87 PP
4Myb_DNA-binding49.21.2e-15440484248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+WT+eEd  l  a++++G   W+++a++++ +Rt+++c+ rw  +l
   XP_015882876.1 440 GKWTAEEDSNLRAAIAEHGYC-WAKVAECVP-RRTDNMCRRRWKVLL 484
                      79*****************99.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0084180277IPR001005SANT/Myb domain
PROSITE profilePS500905.575181275IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-4183199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-4248280IPR009057Homeodomain-like
PROSITE profilePS500909.233276328IPR017877Myb-like domain
SuperFamilySSF466894.9E-12280329IPR009057Homeodomain-like
SMARTSM007172.6E-6280330IPR001005SANT/Myb domain
CDDcd001672.69E-6283328No hitNo description
Gene3DG3DSA:1.10.10.603.4E-13283336IPR009057Homeodomain-like
PfamPF139211.4E-12284345No hitNo description
SuperFamilySSF466891.66E-19313384IPR009057Homeodomain-like
PROSITE profilePS5129420.551329384IPR017930Myb domain
SMARTSM007175.4E-13333382IPR001005SANT/Myb domain
CDDcd001672.75E-11336380No hitNo description
Gene3DG3DSA:1.10.10.605.1E-16337383IPR009057Homeodomain-like
PROSITE profilePS5129411.943386433IPR017930Myb domain
SMARTSM007173.3E-12386435IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-23387480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-17388436IPR009057Homeodomain-like
PfamPF002495.3E-13388431IPR001005SANT/Myb domain
CDDcd001671.52E-11389433No hitNo description
PROSITE profilePS5129424.428434488IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-18437485IPR009057Homeodomain-like
SMARTSM007171.2E-13438486IPR001005SANT/Myb domain
PfamPF002491.5E-14440484IPR001005SANT/Myb domain
CDDcd001671.94E-12441484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MSPSPENQED EEEELSDNGS FDEDMEALRR ACMLTGRNPD DLVDPSSTAT ATADSSVPDA  60
EESSSDEDEL QVLRKIRCRF SITDSFQPLS MKPLSMLPPV LSDGEEDDFE TLRAIQKRFG  120
AYNNEKKDPR VLLISMKKSS ASKDSALPDK KISAMYYGPV ENCQVANYRM ALERFPLALD  180
RKKWSEAEKK NLEKGIRQQF QEMVLQISVD RLSDSGGSYG DLNDLDNLLV SIKDFDITAE  240
NIRKFLPKVN WEQLASMYVV GRSGAECEVR WLNFEDPLIN CNPWTAEEDK TLLFLVQERG  300
ISNWFDIALS LGTNRTPFQC LARYQRSLNV SILKSEWTKD EDAKLRSAVE YFGEGDWQSV  360
ASVLEGRTGT QCSNRWKKSL HPTRERIGRW TPDEDKRLTV AQMLFGPKNW KKTAQFVPGR  420
TEVQCRERWV NSLDPSLKWG KWTAEEDSNL RAAIAEHGYC WAKVAECVPR RTDNMCRRRW  480
KVLLPQEVPL LQEARRIQKA ALIRNFVDRE DERPALGPKD FLPLPMITSE KDVNHTSKQT  540
GKLRGCSNST KKSNLPSGKV PKKRSKKLRK KPRICPEEAL EINNSDGVEA YDGHEPPSKK  600
KTRQHSQKNN FLVPMNGHPP SLPDTIPLMI TNGKRMADPD TKRKKRHVKP HSRKKETIEP  660
DENRDGLQLQ PENLNLASNN DCTETSSGFN NAAQSQRRRA SKKQCKRNIC TTKSTEDQNS  720
VKALSSGTEK DANHQQDCSS CPVSTQLTLI NENDMVGRND EDKKMAPNTR SKRRKGMDMD  780
ESCSLAPPIR SVEVRMDNGD IIENRSFNTR ASKKRSSALK QQHGNNIGTE ATSADQEVYV  840
SFKQNGLKKS KRQDVSCSDQ HLGTTDGDGI TLAYFLHRKS EKRKLHVSDC ADSACNNPKE  900
LESFCDGVDQ PHVGNLAVTN VQDDRLTCCD NGVADIFSSC KTSASDLRNN PTIVATENKP  960
CGVNLVREQN DGFHEPVREL ASINMEDDHG RECVSLASFM KRKSKRKLQN AKGVAHARVP  1020
SNMLKGSKLP PGTVDRFHDV NHMAIMASDN EPGELDLGER LKVHEQEREQ VSNGVEGDED  1080
TNDITLASFL QQRKSRKRRL QSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-302504886159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-302504886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566572KLRKKPR
2641654KRKKRHVKPHSRKK
310921099RKSRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929374.10.0uncharacterized protein LOC107418690 isoform X1
TrEMBLA0A2P5AHC90.0A0A2P5AHC9_TREOI; Octamer-binding transcription factor
STRINGXP_010097590.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-153myb domain protein 4r1