PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882931.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 406aa    MW: 44986.8 Da    PI: 9.069
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.42.9e-1634135280
        trihelix   2 WtkqevlaLiearr.......................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e++ Liea++                        +++++r+gk ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k  +
  XP_015882931.1  34 WTVSETMILIEAKKmdderrlmkrisssssnngdqntHDQSSSRSGKPAELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVRDYERKLVD 128
                     **************999998888888888888888766666666778*********************************************999 PP

        trihelix  74 essstcp 80 
                     e ss + 
  XP_015882931.1 129 EGSSYWN 135
                     9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.48126113IPR017877Myb-like domain
PfamPF138374.7E-1133125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRLYFCMHIY MFDVFDRVVT VIYSVMRDYR KGNWTVSETM ILIEAKKMDD ERRLMKRISS  60
SSSNNGDQNT HDQSSSRSGK PAELRWKWVE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR  120
DYERKLVDEG SSYWNIEKNE RKERNLPTNM LPQIYEALVE VVEKKAQQRV NVMALTATTT  180
TTGGGGTTSS VIVVPSSSPS PNVLSYVHHH QLSLPTPIPS PLMPPPLMLQ HHHISAPPSM  240
AAAAAALPLP SPHIAAAPIL PASQTQQPLS LPYSHPLPTV DSDTSEPSKS PAKRRRRGGG  300
GGGGEGTSTG TASAATTTTA SDDQQVGSAI SRSASIIAEA LEACEEREDR RHRDVLSLHE  360
RKIKIEESKA EINRLGINGL VDAINNLANS IQALASQKNN NQSAPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882931.10.0uncharacterized protein LOC107418735 isoform X2
TrEMBLA0A2P5S9511e-128A0A2P5S951_GOSBA; Uncharacterized protein
STRINGGorai.010G171500.11e-128(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.15e-57Trihelix family protein