PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882967.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 261aa MW: 27855.4 Da PI: 8.2627

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	1.9e-29	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+++p++ ++q++++ +++k++G++ +l+l++a p++ r+++++sl+y A+ r+ +Pv+G++g++++++++l+q+ XP_015882967.1 4 SCNGCRVLRKGCSESCPIRPCLqwiksSESQSNATLFLAKFYGRAGLLNLINASPPHLRPATFKSLLYDACGRIVNPVHGSTGLVWSGNWNLCQA 98 6*******************9999777889*********************************************************** PP DUF260 91 kaelallkee 100 ++e++l +++ XP_015882967.1 99 AVEAVLNGSQ 108 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.993	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSESCP IRPCLQWIKS SESQSNATLF LAKFYGRAGL LNLINASPPH 60 LRPATFKSLL YDACGRIVNP VHGSTGLVWS GNWNLCQAAV EAVLNGSQIA PVPSELAVSS 120 MSMPFKACDI RHVSRDENSA AYDRLHKVQS RNRFKRSAGK KKPKVELKSE TEVAMESAVD 180 NVGGDGSSCA RLSWSGSASR DSGLTQPPSP GGDSGDADND SRSVETVETS LAKPKPKADG 240 EAGCGDLELE LTLGFGPWSQ V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882967.1	0.0	LOB domain-containing protein 40-like
Swissprot	Q9ZW96	4e-72	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A200Q3F6	1e-96	A0A200Q3F6_9MAGN; Uncharacterized protein
STRING	VIT_17s0000g03720.t01	3e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	2e-74	LOB domain-containing protein 40