PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882975.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 831aa    MW: 91361.2 Da    PI: 6.2115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.5e-18563357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_015882975.1  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                    6789*****************************************************97 PP
2START173.31.5e-541533602204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+r++g+v  +++  v+e+l+d++ W ++++ +++l vi ++  g+++l+
  XP_015882975.1 153 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSVIPTAnaGTIELI 246
                     68999*****************************************************.8888888888******************9******* PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_015882975.1 247 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppPSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 341
                     ***************************************99999888899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_015882975.1 342 ESSKILAQKMTIAALRHIR 360
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.71164IPR001356Homeobox domain
SMARTSM003894.4E-15268IPR001356Homeobox domain
CDDcd000862.89E-16565No hitNo description
SuperFamilySSF466891.88E-16567IPR009057Homeodomain-like
PfamPF000464.2E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18763IPR009057Homeodomain-like
CDDcd146862.32E-65796No hitNo description
PROSITE profilePS5084826.466143371IPR002913START domain
CDDcd088751.13E-70147363No hitNo description
Gene3DG3DSA:3.30.530.201.1E-22151357IPR023393START-like domain
SMARTSM002346.9E-51152362IPR002913START domain
PfamPF018523.5E-52153360IPR002913START domain
SuperFamilySSF559616.32E-38153364No hitNo description
PfamPF086704.8E-49686830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLQ ASGTTTDNSC  120
ESVVMNGQHQ QQQNPTPQQP QRDANNPAGL LAIAEETLAE FLSKATGTAV DWVQMIGMKP  180
GPDSIGIVAV SRNCSGVAAR VCGLVSLEPT KVAEILKDRP SWYRDCRCID VLSVIPTANA  240
GTIELIYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVICE RSLTSSTGGP TGPPPSSFVR  300
AEMLPSGFLI RPCEGGGSII HIVDHIDLDA WSVPEVLRPL YESSKILAQK MTIAALRHIR  360
QIAQETSGEI QCGGSRQPAV LRTFSQRLCR GFNDAVNGFA DDGWSLMGSD GVEDVTIVIN  420
SSPNKFLGSQ HNTSIFPTFG GVLCAKASML LQNVPPALLV RFLREHRSEW ADYGVDAYSA  480
ACLKASPYAV PCARPGGFPG SQVILPLAHT VEHEEFMEVV RLEGHTFSPE DVALARDMYI  540
LQLCSGIDEN AVGACAQLVF APIDESFADE APLLPSGFRV IPLDPKSDGP AATRTLDLAS  600
TLEVGPGSTR PTSEANTNSD NLRSVLTIAF QFTFENHLRD NVAAMARQYV RSVVGSVQRV  660
AMAIAPSRLS SQMGSKLLPH SPEALTLAQW ICRSYRIYTG GELVHVDSQS GDAVLKQLWN  720
HSDAIMCCSV KTNASPLFTF ANQAGLDMLE TTLVALQDIM LDKILDEAGR KILCSEFSKI  780
MQQGFAYLPP GICISSMGRP VSYERAVAWK VLNDDDSHHC LAFVFVNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882797.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_015882858.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_015882921.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]