PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882980.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 271aa    MW: 30400.2 Da    PI: 6.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08164211455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++l+P +     k +  a +L + ++Y++sLq
  XP_015882980.1 164 SHSLAERVRRGKINERLKCLQDLVPGC----YKTMGMAVMLDEIINYVQSLQ 211
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.43E-10158215No hitNo description
SuperFamilySSF474591.96E-16158226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16160222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-9166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADFTADLQS FKSSFPCLDI DPNMELIHQF AGISPSVLDN SNLNFQTLLP FSNDNFFGNQ  60
TAELPVNLAE NFLGIVNQNN QNHAAPFPQL TPAGNEFQES KKRKIMEISE SSSANSSPQV  120
SETGMKRKNS SGKGKRVKIN NVKEEEKPKE VVHVRARRGQ ATDSHSLAER VRRGKINERL  180
KCLQDLVPGC YKTMGMAVML DEIINYVQSL QNQVEFLSMK LTAASNFYDF NSETDALETM  240
QRAQANEAKE MERLMREGHG GFGCFHSSWP L
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882980.10.0transcription factor BEE 3
SwissprotQ8GWK75e-70BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2I4FFD11e-129A0A2I4FFD1_JUGRE; transcription factor BEE 3-like
STRINGXP_008240256.11e-126(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-67BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]