PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883030.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 297aa    MW: 32374.3 Da    PI: 7.652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10656347
                     SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqky 47
                      W++eE++ + +a++++  +       +W++Ia++++ ++ l+++k ++q++
   XP_015883030.1  6 VWSKEEEKAFENAIAMHWIEdekeskeQWEKIASMVP-NKNLEELKQHYQML 56
                     6*****************99*****************.************86 PP
2Myb_DNA-binding40.85.3e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_015883030.1 133 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 177
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.354261IPR017884SANT domain
SMARTSM007172.1E-7359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-5557IPR009057Homeodomain-like
SuperFamilySSF466897.11E-9563IPR009057Homeodomain-like
PfamPF002493.2E-7656IPR001005SANT/Myb domain
CDDcd001675.61E-9757No hitNo description
PROSITE profilePS5129417.311125182IPR017930Myb domain
SuperFamilySSF466894.95E-17128183IPR009057Homeodomain-like
SMARTSM007173.2E-11130180IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-17130180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-11131176IPR009057Homeodomain-like
PfamPF002492.0E-11133177IPR001005SANT/Myb domain
CDDcd001671.50E-10133178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSSTVWSKE EEKAFENAIA MHWIEDEKES KEQWEKIASM VPNKNLEELK QHYQMLVDDV  60
NAIEAGHIPV PNYVGDETFS LNKDSHGSSG SAASEKRLNC GHGSGFSGLG QDPSGHGGKG  120
GSRSDQERRK GIPWTEEEHR LFLLGLEKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN NADVTPHQAP ITGQQTTANP SSAGAAIAPP VKHRGQPHMP  240
GIGMYGAPLG HPVAAPPGHM GSALGTPVML PPGHHPHPHP PYVVPVAYPM APPTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-12373773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883030.10.0transcription factor MYBS1
SwissprotQ9FNN67e-83SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2I4F1861e-173A0A2I4F186_JUGRE; transcription factor DIVARICATA-like
STRINGPOPTR_0012s05720.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-82MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]