PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883047.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 384aa    MW: 44719.1 Da    PI: 7.5461
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1852135290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y +YAk +GF + +++s++ k++ge+++ +fvC  +g ++e++ +     ++ +  +++Ck +l+ kk+  gkw+v+++ + HnHel 
  XP_015883047.1  52 CYLKYAKLTGFGIAIRSSHRLKTSGEFIDVKFVCIIYGLKRESNAA-----NQCPCLKIDCKSMLHGKKKLGGKWYVHNFIETHNHELY 135
                     799*************************************998877.....9999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1652136IPR004330FAR1 DNA binding domain
PfamPF105516.9E-33207300IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDLEIDLNLN LDECNKESDE REIDNIKDGE DGKFLELYDG MEFDSYQEAY SCYLKYAKLT  60
GFGIAIRSSH RLKTSGEFID VKFVCIIYGL KRESNAANQC PCLKIDCKSM LHGKKKLGGK  120
WYVHNFIETH NHELYPAHAH YFPCYKRITS SNKNSINNLH AVGVSTSKIF IAIAKQHGGY  180
QNVGFLEKEI RNHLDKERED YKIFGDVVSF DTTYITNKYE MPLAPFIGVN THFQSILFGC  240
ALLKDETAST FVWLMKTWIR AMGGKPQSAI LTNQDKAMKA AIAIVFPNTG HRFCLWHILR  300
KVLKRLAHVT KENESFMRSF NNCIYNSWTN EDFENKWWNM IKTCKIEGNE WLESLFDYHK  360
YWMPVYMKDT FFAEPFDGNG RFNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929951.10.0LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2K3NGL21e-150A0A2K3NGL2_TRIPR; Protein far-red impaired response 1-like
STRINGXP_010260557.11e-117(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-98FAR1 family protein