PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883091.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 376aa    MW: 41882.7 Da    PI: 4.7706
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.81.1e-082465439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r+C++++    +l+C++++ +lC  C + +H +      H++
  XP_015883091.1 24 RICDTCQAAASTLYCHTDSAFLCSACDERIHASnslafpHER 65
                    79******99*********************77778888876 PP
2zf-B_box29.31.8e-0965111242
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     + ++C+ +e+ ++   C+ +   lC++C +e+H+       H++vp+
  XP_015883091.1  65 RVWICTACENAPAAVTCKADAASLCHSCDVEIHSAnplahrHNRVPI 111
                     5689****************************966899977888876 PP
3CCT67.82.9e-23310353144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++l+Y+eKrk RkFeKkirY+sRKa+Ae+RpRvKGrF++++
  XP_015883091.1 310 REAKVLKYREKRKARKFEKKIRYASRKAYAETRPRVKGRFARRT 353
                     9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8262168IPR000315B-box-type zinc finger
SMARTSM003364.4E-72168IPR000315B-box-type zinc finger
PfamPF006431.1E-52455IPR000315B-box-type zinc finger
CDDcd000217.01E-92468No hitNo description
PROSITE profilePS5011910.4864111IPR000315B-box-type zinc finger
PfamPF006433.0E-765111IPR000315B-box-type zinc finger
CDDcd000214.18E-867111No hitNo description
SMARTSM003364.7E-869111IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767310352IPR010402CCT domain
PfamPF062037.0E-17310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLKVDSGMLK VDSGGEGYHG NWARICDTCQ AAASTLYCHT DSAFLCSACD ERIHASNSLA  60
FPHERVWICT ACENAPAAVT CKADAASLCH SCDVEIHSAN PLAHRHNRVP ITSLPIVEFP  120
TLTTCLDGLQ DPMLEMGNEI LGRETNEEID EGEADSWLLL DPDENENLTS SGFKPGEAVD  180
DQYLGIVEYN STCTNHDRQQ GDYNQQQTYS VYEGDNVSDS IVPVQSVEEQ SQVLQHNIQI  240
NGEYEASKAV ISSTPSSTQC ATLSILNASI LPKPTINNIS NSYTKFPKVT AEISQNSSLL  300
MPLQITSTNR EAKVLKYREK RKARKFEKKI RYASRKAYAE TRPRVKGRFA RRTDIELEED  360
QMFLIEEYSY GIVPSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883091.10.0zinc finger protein CONSTANS-LIKE 2-like
TrEMBLA0A1R3KIG11e-130A0A1R3KIG1_9ROSI; Zinc finger, B-box
STRINGEOY222161e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.15e-71B-box type zinc finger protein with CCT domain