PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015883277.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 318aa MW: 34567.9 Da PI: 7.8236

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015883277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	29	88	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s XP_015883277.1 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 88 57899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	27	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MQDIHSIGGG RFFGGGTGDR RLRPHHHQNH QALKCPRCDS LNTKFCYYNN YNLSQPRHFC 60 KSCRRYWTKG GVLRNVPVGG GCRKTKRSKP KASSATTSTP SPPPPVALER KSNSHSSSES 120 SSLTANNTNA TATTEAVSAP STSSASNLLN IQESKFFVAQ NSNPSFESTL LEQGSDCGIF 180 SEIGSFTSLI TSSAATEAMP FGYSNISDIS ISPFRLNQQG QDNQVQQTQW HQQSQKAGMS 240 ISDQELKMQE ITGGLLDQTA QVDLSGLQNR SGGGGFGSLG DWQPGGDQGL FDLTNTVDQT 300 YWSQSQWTDQ DHPSLYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	GGRFFGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015883277.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015883277.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	W9RP28	1e-140	W9RP28_9ROSA; Dof zinc finger protein
STRING	XP_010101639.1	1e-141	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	8e-34	OBF binding protein 4