PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883375.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 368aa    MW: 40091.4 Da    PI: 8.7279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16166212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  XP_015883375.1 166 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKNLQ 212
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-18160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.6162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-19165240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-17167216No hitNo description
SMARTSM003531.8E-16168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MHGLGGLVPN TASAKPTWGR AGDTLESLVH RATISQKRHS NLLNPHNHHC ANLVASSSQS  60
YDQVPQFSKR TKSESKNLSC SSNGISSMRQ VPMTTSACVS GSDTTMMTST WANSFDSSYL  120
TFNNETTFED ADTHGGLMEN QDEDRETNVE SAGRSNSTRR TRAAAVHNQS ERRRRDRINQ  180
KMKALQKLVP NASKTDKASM LDEVIEYLKN LQAQVQLMTT MRSGSMPQMM MPLAMQQHLQ  240
MSLLARMGMG TVGLGMGMGM LDMASMARAP PQSIPSLVHP PQVAATPPAF VTSPFMVPSM  300
IPTNPPAQAK PEHGTSSSVP LPDPYCALLA QSMNMDLYNK MAVLYSQQAN QTTQATGCPS  360
RSSHPQED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883375.10.0transcription factor UNE10-like
TrEMBLA0A061FY161e-113A0A061FY16_THECC; DNA binding protein, putative isoform 3
TrEMBLA0A2P5FW111e-113A0A2P5FW11_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_002514702.11e-113(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-30bHLH family protein