PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883376.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 232aa    MW: 25485.3 Da    PI: 9.533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-163076455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  XP_015883376.1 30 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKNLQ 76
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-192486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.62675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1929104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-143076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-173180No hitNo description
SMARTSM003531.8E-163281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQENQDEDRE TNVESAGRSN STRRTRAAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD  60
KASMLDEVIE YLKNLQAQVQ LMTTMRSGSM PQMMMPLAMQ QHLQMSLLAR MGMGTVGLGM  120
GMGMLDMASM ARAPPQSIPS LVHPPQVAAT PPAFVTSPFM VPSMIPTNPP AQAKPEHGTS  180
SSVPLPDPYC ALLAQSMNMD LYNKMAVLYS QQANQTTQAT GCPSRSSHPQ ED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883375.11e-168transcription factor UNE10-like
RefseqXP_015883376.11e-170transcription factor UNE10-like
TrEMBLA0A061FXG38e-95A0A061FXG3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
TrEMBLA0A061FY162e-95A0A061FY16_THECC; DNA binding protein, putative isoform 3
TrEMBLA0A061G4L14e-95A0A061G4L1_THECC; DNA binding protein, putative isoform 4
TrEMBLW9RUJ31e-94W9RUJ3_9ROSA; Transcription factor UNE10
STRINGEOY219711e-95(Theobroma cacao)
STRINGXP_010106642.12e-95(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-26bHLH family protein